Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs13159978 chr5:80547883 C/T 2.63E-5 494 30.8 30.87 37.77 KM Plot
PRAD rs13164313 chr5:171736074 C/A 1.29E-5 489 29.95 33.47 28.43 KM Plot
PRAD rs13171173 chr5:138042464 A/C 1.4E-5 494 24.9 31.12 32.4 KM Plot
PRAD rs13173618 chr5:138139780 T/G 1.85E-7 488 31.32 30.9 22.47 KM Plot
PRAD rs1317756 chr16:88780023 C/T 8.5E-5 494 30.93 31.57 28.93 KM Plot
PRAD rs13178278 chr5:179055511 C/T 2.03E-12 484 30.73 33.07 18.88 KM Plot
PRAD rs13179100 chr5:179034025 A/G 0.000155 483 30.53 34.37 32.9 KM Plot
PRAD rs13179241 chr5:179034115 A/G 2.72E-12 478 30.53 34.37 18.88 KM Plot
PRAD rs13185221 chr5:178970706 T/G 0.000176 473 24.38 36.35 30.8 KM Plot
PRAD rs13189491 chr5:179035699 T/C 0.00015 484 30.75 33.07 32.9 KM Plot
PRAD rs13221026 chr7:6765530 C/T 2.84E-11 490 31.07 27.77 38.33 KM Plot
PRAD rs13224907 chr7:6773892 C/T 3.33E-5 483 31 31.3 38.33 KM Plot
PRAD rs13230987 chr7:6726320 C/G 2.51E-11 492 31.13 27.4 38.33 KM Plot
PRAD rs13233856 chr7:6777784 A/G 3.64E-5 488 31 30.27 35.28 KM Plot
PRAD rs13234419 chr7:43577715 A/G 8.38E-5 494 20.33 30.75 31.3 KM Plot